Genetic and Cytogenetic Characterization of Local Rice (Oryza sativa L.) Varieties from Chalan Beel
DOI:
https://doi.org/10.24925/turjaf.v14i1.127-136.8235Keywords:
Genetic variation, Chromosome morphology, Karyotype analysis, idiograms, Chalan BeelAbstract
An experiment was conducted in the Agronomy Field Laboratory, along with a laboratory experiment at the Farming System Engineering Laboratory, Department of Agronomy and Agricultural Extension, University of Rajshahi, from mid-May to mid-November 2024. Eight rice genotypes were analyzed to understand their genetic variation, heritability (broad sense), genetic advance, and karyotype details. The study design followed Randomized Complete Block Design (RCBD), and each treatment was repeated three times, evaluating agronomic traits like plant height, leaf number, tiller number, effective tillers per meter², panicle length, grains per plant, filled grains, 1000-grain weight, straw yield, yield of grain, and biological yield. Significant variation was observed across most traits. Grain yield exhibited the highest genotypic (GCV) and phenotypic coefficient of variation (PCV), followed by plant height, while grain per plant and 1000-grain weight showed the lowest. For each trait, the phenotypic coefficient of variation (PCV) was slightly higher than the genotypic coefficient of variation (GCV), indicating a measurable environmental influence on trait expression. Heritability was observed to be high in the case of 1000-grain weight, followed by panicle length and grain yield, whereas the height of the plant showed the highest genetic advance. For karyotype analysis, metaphase plate photomicrographs, camera-lucida drawings, and idiograms were used to assess total chromosome length (TCL), arm ratio, centromeric position, TF%, and karyotype formulae. The highest TCL with the lowest TF% was observed in SADA VAULA, while the lowest TCL with the highest TF% was recorded in BINA-7. The combination of high heritability and genetic advance for traits like plant height and grain yield indicates the predominance of additive gene action and suggests good potential for improvement through direct selection.
References
Caradus, J. R. (2024). Perceptions of plant breeding methods–from ‘phenotypic selection’ to ‘genetic modification’ and ‘new breeding technologies.’ New Zealand Journal of Agricultural Research, 67(6), 621–669. https://doi.org/10.1080/00288233.2023.2187425
Comstock, R. E., & Robinson, H. F. (1952). Estimation of average dominance of genes. Heterosis, 2, 494–516.
Demeke, B., Dejene, T., & Abebe, D. (2023). Genetic variability, heritability, and genetic advance of morphological, yield-related and quality traits in upland rice ( Oryza Sativa L.) genotypes at pawe, northwestern Ethiopia. Cogent Food & Agriculture, 9(1), 2157099. https://doi.org/10.1080/23311932.2022.2157099
Duan, B., Fang, S., Gong, Y., Peng, Y., Wu, X., & Zhu, R. (2021). Remote estimation of grain yield based on UAV data in different rice cultivars under contrasting climatic zone. Field Crops Research, 267, 108148.
Dwivedi, S. L., Goldman, I., Ceccarelli, S., & Ortiz, R. (2020). Advanced analytics, phenomics and biotechnology approaches to enhance genetic gains in plant breeding. Advances in Agronomy, 162, 89–142.
El-Aty, M. S. A., Abo-Youssef, M. I., Sorour, F. A., Salem, M., Gomma, M. A., Ibrahim, O. M., Yaghoubi Khanghahi, M., Al-Qahtani, W. H., Abdel-Maksoud, M. A., & El-Tahan, A. M. (2024). Performance and stability for grain yield and its components of some rice cultivars under various environments. Agronomy, 14(9), 2137.
Fadah, I., Lutfy, C., & Amruhu, A. (2024). Analysis of Rice Trade and Food Security in Southeast Asian Countries. KnE Social Sciences, 641–653.
Gowsika, S., Sankari, A., & Kavitha, P. S. (2025). Assessment of Genetic Variability, Heritability and Correlation in Crossandra (Crossandra infundibuliformis (L.)(Nees) Genotypes. International Journal of Plant & Soil Science, 37(1), 19–25.
Habib, M. A., Azam, M. G., Haque, M. A., Hassan, L., Khatun, M. S., Nayak, S., Abdullah, H. M., Ullah, R., Ali, E. A., & Hossain, N. (2024). Climate-smart rice (Oryza sativa L.) genotypes identification using stability analysis, multi-trait selection index, and genotype-environment interaction at different irrigation regimes with adaptation to universal warming. Scientific Reports, 14(1), 13836.
Hanson, C. H., Robinson, H. F., & Comstock, R. E. (1956). Biometrical Studies of Yield in Segregating Populations of Korean Lespedeza1. Agronomy Journal, 48(6), 268–272. https://doi.org/10.2134/agronj1956.00021962004800060008x
Huziwara, Y. (1962). KARYOTYPE ANALYSIS IN SOME GENERA OF COMPOSITAE. VIII. FURTHER STUDIES ON THE CHROMOSOMES OF ASTER. American Journal of Botany, 49(2), 116–119. https://doi.org/10.1002/j.1537-2197.1962.tb14916.x
Ishfaq, J., Soomar, A. M., Khalid, F., & Abbasi, Y. (2023). Assessing rice (Oryza sativa L.) quality: A comprehensive review of current techniques and future directions. Journal of Agriculture and Food Research, 14, 100843.
Johnson, H. W., Robinson, H. F., & Comstock, R. E. (1955). Estimates of genetic and environmental variability in soybeans. https://www.cabidigitallibrary.org/doi/full/10.5555/19561600791
KB, W. (1983). Karyomorphological studies in some of the varieties of bengal gram (Cicer arietinum, Linn.). Cytologia, 48(3), 699–705.
Mousa, A. M., Ali, A. M.-G., Omar, A. E., Alharbi, K., Abd El-Moneim, D., Mansour, E., & Elmorsy, R. S. (2024). Physiological, Agronomic, and Grain Quality Responses of Diverse Rice Genotypes to Various Irrigation Regimes under Aerobic Cultivation Conditions. Life, 14(3), 370.
Pradhan, J. R., Sahoo, J. P., Behera, L., Jangid, K. K., & Pramanik, K. (2024). Understanding the regulatory mechanism of abiotic stress tolerance in plants by using genomic approaches. In Improving Stress Resilience in Plants (pp. 331–363). Elsevier. https://www.sciencedirect.com/science/article/pii/B9780443189272000169
Rahul, G. K., Bhavani, P., Shyamalamma, S., & Nandini, C. (2024). Assessment of genetic diversity in germplasm collections of Browntop millet (Brachiaria ramosa (L.) Stapf.) using morphological traits. Electronic Journal of Plant Breeding, 15(1), 217–225.
Saleem, H., Sadaqat, H. A., Razzaq, H., Chattha, A. A., & Khan, S. H. (2023). Heterotic grouping with combining ability and gene action in Sesamum indicum L. using linetimes tester analysis. https://sabraojournal.org/wp-content/uploads/2023/04/SABRAO-J-Breed-Genet-55-2-367-378-MS22-114.pdf
Sarma, P. K., Alam, M. J., Begum, I. A., & McKenzie, A. M. (2024). The effect of total factor productivity on the food security and livelihood vulnerability of farm households in Bangladesh. Frontiers in Sustainable Food Systems, 8, 1395897.
Shivasubramanian, K., & Menon, M. H. (1973). Genetic variability and heritability of qualitative characters in Indian mustard (Brassica juncea). Indian Journal of Agricultural Sciences, 38, 820–825.
Singh, R. K., & Chaudhary, B. D. (1985). Biometrical methods In quantitative genetics (3rd edn., pp. 39–68). Kalyanl Pub.
Singh, Y., Dhankher, O. P., & Kumar, U. (2025). Genotype and Environmental Influences on Elemental Profiles and Toxic Element Accumulation in Indica Rice (Oryza sativa L.). Journal of Soil Science and Plant Nutrition. https://doi.org/10.1007/s42729-025-02252-y
Sinha, P., Singh, V. K., Bohra, A., Kumar, A., Reif, J. C., & Varshney, R. K. (2021). Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits. Theoretical and Applied Genetics, 134(6), 1829–1843. https://doi.org/10.1007/s00122-021-03847-6
Siva Reddy, K. V., Srinivas, T., Nagendra Rao, K., Bindu Madhavi, G., & Srinivasa Rao, V. (n.d.). Estimates of PCV, GCV and Heritability Studies for Yield components and Nutritional Traits in Blackgram [Vigna mungo (L.) Hepper].
Tyagi, S., Rajpurohit, D., & Sharma, A. (2021). Genetic Fidelity Studies for Testing True-to-Type Plants in Some Horticultural and Medicinal Crops Using Molecular Markers. In D. Kumar Srivastava, A. Kumar Thakur, & P. Kumar (Eds.), Agricultural Biotechnology: Latest Research and Trends (pp. 147–170). Springer Nature Singapore. https://doi.org/10.1007/978-981-16-2339-4_7
Ukwu, U. N., Muller, O., Meier-Grüll, M., & Uguru, M. I. (2025). Agrivoltaics shading enhanced the microclimate, photosynthesis, growth and yields of vigna radiata genotypes in tropical Nigeria. Scientific Reports, 15(1), 1190.
Yeshitila, M., Gedebo, A., Olango, T. M., & Tesfaye, B. (2023). Morphological characterization, variability, and diversity among amaranth genotypes from Ethiopia. Genetic Resources and Crop Evolution, 70(8), 2607–2636.
Zheng, H., Ma, W., & Zhou, X. (2024). Promoting sustainable agrifood production under climate change: Adaptation, returns, and food security implications. International Journal of Sustainable Development & World Ecology, 31(8), 1083–1094. https://doi.org/10.1080/13504509.2024.2385095
Downloads
Published
Issue
Section
License
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.






